Label volume

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Inheritance graph

Defined in file : brainvisa/types/builtin.py

Used in the following processes

Conversion of Freesurfer images to original t1mri space
DICE index
Graph To Volume Converter
Label volume editor
Morphomaths
Morphomaths basic
SPM - Brain Tissues Volumes
Surfacic Sulci To Labels Volume
Volume To ROI Graph Converter

Associated formats

Aperio svs
BrainVISA volume formats
DICOM image
Directory
ECAT i image
ECAT v image
FDF image
FreesurferMGH
FreesurferMGZ
GIS image
gz compressed MINC image
gz compressed NIFTI-1 image
Hamamatsu ndpi
Hamamatsu vms
Hamamatsu vmu
JPEG image
Leica scn
MINC image
NIFTI-1 image
Sakura svslide
SPM image
TIFF image
TIFF(.tif) image
Ventana bif
Zeiss czi

Associated ontology rules

Key attributes

  • brainvisa-3.0 :
  • protocol ,  subject ,  side ,  acquisition ,  filename_variable
  • brainvisa-3.1.0 :
  • protocol ,  subject ,  acquisition ,  analysis ,  side ,  graph_version ,  normalization ,  sulci_recognition_session ,  manually_labelled ,  automatically_labelled ,  best
  • brainvisa-3.2.0 :
  • Study ,  subject ,  acquisition ,  analysis ,  graph_version ,  sulci_recognition_session ,  Template ,  side ,  manually_labelled ,  automatically_labelled ,  contrast ,  rescan ,  time_point ,  acquisition_date ,  time_duration ,  mapped ,  center ,  modality ,  explicit_mask ,  origin_subject ,  space ,  processing ,  tracer ,  ROI ,  normalization ,  best ,  acquisition_sequence ,  VOIReference ,  segmentation_method ,  template ,  factorial_design ,  first_group ,  second_group ,  contrast_type ,  contrast_index ,  basename ,  group_name ,  atlas ,  tissue_class ,  VOIStatistic
  • flat :
  • side
  • freesurfer :
  • subject ,  space ,  atlas ,  side
  • freesurfer-bids :
  • subject ,  acquisition ,  space ,  atlas ,  side
  • morphologist-bids-1.0 :
  • time_duration ,  time_point ,  acquisition_date ,  rescan ,  subject ,  session ,  acquisition ,  analysis ,  graph_version ,  side ,  normalization ,  sulci_recognition_session ,  manually_labelled ,  automatically_labelled ,  best
  • morphologist-bids-2.0 :
  • time_duration ,  time_point ,  acquisition_date ,  rescan ,  subject ,  session ,  bids ,  analysis ,  graph_version ,  side ,  normalization ,  sulci_recognition_session ,  manually_labelled ,  automatically_labelled ,  best
  • shared :
  • explicit_mask ,  resolution ,  VOIReference ,  atlas ,  VOIStatistic